[Rocks-Discuss] torque output and error files fail to be copied

J. Greenbaum jgbaum at liai.org
Thu Nov 3 14:39:07 PDT 2011


Hi, 


I'm having an issue with the torque output and error files on our ROCKS cluster. For some reason, they fail to be copied to the proper place after the job has finished executing and the user gets an email similar to the one attached below. Has anyone experienced anything similar? Any ideas on how to solve? 


Thanks in advance! 


-J 


-- 
Jason Greenbaum 
Manager, Bioinformatics Core | jgbaum at liai.org 
La Jolla Institute for Allergy and Immunology 

PBS Job Id: 571.herman.liai.org 
Job Name: cufflinks 
Exec host: compute-0-3/23+compute-0-3/22+compute-0-3/21+compute-0-3/20+compute-0-3/19+compute-0-3/18+compute-0-3/17+compute-0-3/16+compute-0-3/15+compute-0-3/14+compute-0-3/13+compute-0-3/12+compute-0-3/11+compute-0-3/10+compute-0-3/9+compute-0-3/8+compute-0-3/7+compute-0-3/6+compute-0-3/5+compute-0-3/4+compute-0-3/3+compute-0-3/2+compute-0-3/1+compute-0-3/0 
An error has occurred processing your job, see below. 
Post job file processing error; job 571.herman.liai.org on host compute-0-3/23+compute-0-3/22+compute-0-3/21+compute-0-3/20+compute-0-3/19+compute-0-3/18+compute-0-3/17+compute-0-3/16+compute-0-3/15+compute-0-3/14+compute-0-3/13+compute-0-3/12+compute-0-3/11+compute-0-3/10+compute-0-3/9+compute-0-3/8+compute-0-3/7+compute-0-3/6+compute-0-3/5+compute-0-3/4+compute-0-3/3+compute-0-3/2+compute-0-3/1+compute-0-3/0 

Unable to copy file /opt/torque/spool/571.herman.liai.org.OU to jgbaum at herman.liai.org :/home/jgbaum/projects/cufflinks/cufflinks_resting.out 
*** error from copy 
scp: /home/jgbaum/projects/cufflinks/cufflinks_resting.out: No such file or directory 
*** end error output 
Output retained on that host in: /opt/torque/undelivered/571.herman.liai.org.OU 

Unable to copy file /opt/torque/spool/571.herman.liai.org.ER to jgbaum at herman.liai.org :/home/jgbaum/projects/cufflinks/cufflinks_resting.err 
*** error from copy 
scp: /home/jgbaum/projects/cufflinks/cufflinks_resting.err: No such file or directory 
*** end error output 
Output retained on that host in: /opt/torque/undelivered/571.herman.liai.org.ER 
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